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ASM334465v1

Organism name:
Candidatus Korarchaeota archaeon NZ13-K (archaea)
Taxonomy check:
Inconclusive
Isolate:
NZ13-K
BioSample:
SAMN05172504
BioProject:
PRJNA322661
Submitter:
Portland State University
Date:
2018/07/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003344655.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MAIU01
Assembly method:
IDBA v. 1.1.0
Expected final version:
yes
Genome coverage:
12.0x
Sequencing technology:
Illumina MiSeq

IDs: 1835411 [UID] 6959168 [GenBank]

See Genome Information for Candidatus Korarchaeota archaeon NZ13-K

History (Show revision history)

Comment

Bacteria and source DNA available from Anna-Louise Reysenbach.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/18/2018 11:01:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,596
CDS (total)::1,551
Genes (coding)::1,535
CDS (coding)::1,535
Genes (RNA)::45
rRNAs::1, 1 (5S, 16S)
complete rRNAs::1 (5S)
partial rRNAs::1 (16S)
tRNAs::41
ncRNAs::2
Pseudo Genes (total)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::10 of 16
Pseudo Genes (incomplete)::7 of 16
Pseudo Genes (internal stop)::2 of 16
Pseudo Genes (multiple problems)::3 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,374,210
Total ungapped length1,374,210
Number of contigs148
Contig N5014,152
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)148

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,374,2101481,374,21014,15200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Korarchaeota archaeon NZ13-KCandidatus Korarchaeota archaeon NZ13-K

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003056285.1Candidatus Terraquivivens tikiterensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.930.310.28

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena