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ASM1334722v1

Organism name:
Candidatus Accumulibacter similis (b-proteobacteria)
Taxonomy check:
OK
Isolate:
SSB1
BioSample:
SAMN15063051
BioProject:
PRJNA611629
Submitter:
Singapore Centre for Environmental Life Sciences Engineering
Date:
2020/06/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_013347225.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
Canu v. 1.8
Expected final version:
no
Genome coverage:
50x
Sequencing technology:
Oxford Nanopore MiniION

IDs: 7282811 [UID] 20082388 [GenBank]

See Genome Information for Candidatus Accumulibacter similis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/08/2020 16:30:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,453
CDSs (total)::4,396
Genes (coding)::4,287
CDSs (with protein)::4,287
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::109
CDSs (without protein)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::38 of 109
Pseudo Genes (incomplete)::69 of 109
Pseudo Genes (internal stop)::12 of 109
Pseudo Genes (multiple problems)::9 of 109
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,039,009
Total ungapped length5,039,009
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013347235.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP054595.1n/an/a

Assembly statistics

MoleculeTotal
Length
Chromosome 5,039,009

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Accumulibacter similisCandidatus Accumulibacter similis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017592775.1Candidatus Accumulibacter conexussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.9972.0174.50

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected