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ASM1465453v1

Organism name:
[Pseudomonas] boreopolis (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: JCM 13306
BioSample:
SAMD00245232
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
  • not used as type
GenBank assembly accession:
GCA_014654535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BNBA01
Assembly method:
gcType assembly pipeline
Genome coverage:
142X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8124001 [UID] 22197738 [GenBank]

See Genome Information for [Pseudomonas] boreopolis

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10009090 

Annotated by DFAST v.1.2.7 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length4,338,773
Total ungapped length4,338,773
Number of contigs91
Contig N50111,261
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,338,773914,338,773111,26100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Pseudomonas] boreopolis[Pseudomonas] boreopolis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001431645.1Stenotrophomonas panacihumitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6242.6147.12

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna