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PDT000083031.3

  • Record removed. This version of the assembly has been suppressed.
Description:
NCBI Pathogen Detection Assembly PDT000083031.3
Organism name:
Acinetobacter sp. 0000-0052-5682 (g-proteobacteria)
Isolate:
37
BioSample:
SAMN04040113
BioProject:
PRJNA278886
Submitter:
Brigham & Women's Hospital
Date:
2021/01/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_016541725.1 (suppressed)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAYNYR01
Assembly method:
ARGO-CD v. 2.1
Expected final version:
no
Genome coverage:
199x
Sequencing technology:
ILLUMINA

IDs: 9080351 [UID] 24452388 [GenBank]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then ... concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::07/14/2016 23:16:49
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::4.5
Genes (total)::3,806
CDS (total)::3,734
Genes (coding)::3,658
CDS (coding)::3,658
Genes (RNA)::72
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::61
ncRNAs::5
Pseudo Genes (total)::76
Pseudo Genes (ambiguous residues)::0 of 76
Pseudo Genes (frameshifted)::11 of 76
Pseudo Genes (incomplete)::57 of 76
Pseudo Genes (internal stop)::14 of 76
Pseudo Genes (multiple problems)::6 of 76
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,989,844
Total ungapped length3,989,844
Number of contigs84
Contig N50120,173
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,989,844843,989,844120,17300