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ASM1711423v1

Organism name:
archaeon AH-315-M20 (archaea)
Taxonomy check:
Inconclusive
Isolate:
AH-315-M20
BioSample:
SAMN17985272
BioProject:
PRJNA702937
Submitter:
Bigelow Laboratory For Ocean Sciences
Date:
2021/03/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_017114235.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAFIVK01
Assembly method:
SPAdes v. v3.9.0 --careful --sc --phred-offset 33
Expected final version:
yes
Single-cell amplification:
WGA-X
Genome coverage:
25.887580741784593x
Sequencing technology:
Illumina HiSeq

IDs: 9400391 [UID] 25273118 [GenBank]

See Genome Information for archaeon AH-315-M20

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/24/2021 17:52:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::310
CDSs (total)::304
Genes (coding)::302
CDSs (with protein)::302
Genes (RNA)::6
tRNAs::6
ncRNAs::0
Pseudo Genes (total)::2
CDSs (without protein)::2
Pseudo Genes (ambiguous residues)::0 of 2
Pseudo Genes (frameshifted)::1 of 2
Pseudo Genes (incomplete)::1 of 2
Pseudo Genes (internal stop)::0 of 2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length322,169
Total ungapped length322,169
Number of contigs28
Contig N5027,818
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced322,16928322,16927,81800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
archaeon AH-315-M20archaeon AH-315-M20

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana