U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1730243v1

Organism name:
Candidatus Accumulibacter necessarius (b-proteobacteria)
Taxonomy check:
OK
Isolate:
UW12-POB
BioSample:
SAMN18059894
BioProject:
PRJNA704939
Submitter:
University of Wisconsin-Madison
Date:
2021/03/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_017302435.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAFLDL01
Assembly method:
metaSPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
2.026036762x
Sequencing technology:
Illumina HiSeq

IDs: 9499571 [UID] 25484338 [GenBank]

See Genome Information for Candidatus Accumulibacter necessarius

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/02/2021 23:06:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,248
CDSs (total)::4,199
Genes (coding)::4,075
CDSs (with protein)::4,075
Genes (RNA)::49
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::40 of 124
Pseudo Genes (incomplete)::82 of 124
Pseudo Genes (internal stop)::28 of 124
Pseudo Genes (multiple problems)::25 of 124
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,564,207
Total ungapped length4,563,997
Gaps between scaffolds0
Number of scaffolds88
Scaffold N5083,370
Scaffold L5020
Number of contigs91
Contig N5080,670
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)88

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,564,207884,563,99783,37030

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Accumulibacter necessariusCandidatus Accumulibacter necessarius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016709675.1Candidatus Accumulibacter proximussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.1072.4561.21

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected