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ASM2013631v1

  • Anomalous assembly.
Organism name:
Campylobacter sp. RM10535 (g-proteobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: RM10535
BioSample:
SAMN14886951
BioProject:
PRJNA66815
Submitter:
USDA, ARS, WRRC
Date:
2021/09/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • genus undefined
GenBank assembly accession:
GCA_020136315.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACHUH01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
229x
Sequencing technology:
Illumina MiSeq

IDs: 10990181 [UID] 29038128 [GenBank]

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2020 19:38:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,508
CDSs (total)::1,462
Genes (coding)::1,434
CDSs (with protein)::1,434
Genes (RNA)::46
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::40
ncRNAs::3
Pseudo Genes (total)::28
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::0 of 28
Pseudo Genes (frameshifted)::22 of 28
Pseudo Genes (incomplete)::7 of 28
Pseudo Genes (internal stop)::4 of 28
Pseudo Genes (multiple problems)::5 of 28
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,461,002
Total ungapped length1,461,002
Number of contigs50
Contig N50121,743
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,461,002501,461,002121,74300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter sp. RM10535Campylobacter sp. RM10535

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005406225.1Campylobacter taeniopygiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.0190.3376.50

ANI result

Taxonomy check statusBest match statusComment
Failedbelow-threshold-mismatchna