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UCB_Xborealis_1

Organism name:
Xenopus borealis (Kenyan clawed frog)
Infraspecific name:
Strain: NASCO
BioSample:
SAMN27622247
BioProject:
PRJNA827809
Submitter:
University of California, Berkeley
Date:
2022/07/22
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024363595.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAMBMQ01
Assembly method:
Meraculous v. 2.2.4; Dovetail Genomics HiRise v. 2019
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq

IDs: 13334711 [UID] 34816178 [GenBank]

See Genome Information for Xenopus borealis

History (Show revision history)

Comment

Global statistics

Total sequence length2,747,450,723
Total ungapped length2,195,288,327
Gaps between scaffolds0
Number of scaffolds23,435
Scaffold N50143,989,302
Scaffold L508
Number of contigs255,128
Contig N5021,213
Contig L5025,746
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)23,435

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_024365075.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LCM044431.1n/an/a0
Chromosome 1SCM044432.1n/an/a0
Chromosome 2LCM044433.1n/an/a0
Chromosome 2SCM044434.1n/an/a0
Chromosome 3LCM044435.1n/an/a0
Chromosome 3SCM044436.1n/an/a0
Chromosome 4LCM044437.1n/an/a0
Chromosome 4SCM044438.1n/an/a0
Chromosome 5LCM044439.1n/an/a0
Chromosome 5SCM044440.1n/an/a0
Chromosome 6LCM044441.1n/an/a0
Chromosome 6SCM044442.1n/an/a0
Chromosome 7LCM044443.1n/an/a0
Chromosome 7SCM044444.1n/an/a0
Chromosome 8LCM044445.1n/an/a0
Chromosome 8SCM044446.1n/an/a0
Chromosome 9_10LCM044447.1n/an/a0
Chromosome 9_10SCM044448.1n/an/a0
unplacedn/an/an/a23,417

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,747,450,72323,4352,195,288,327143,989,302231,6930
Chromosome 1L230,775,5091196,638,976230,775,50914,5690
Chromosome 1S194,819,8671148,202,501194,819,86718,8530
Chromosome 2L183,268,8801151,423,642183,268,88013,5810
Chromosome 2S164,980,4221130,865,558164,980,42214,2160
Chromosome 3L143,989,3021118,115,887143,989,30211,1240
Chromosome 3S125,725,3631104,280,413125,725,3639,1780
Chromosome 4L153,391,6911122,805,442153,391,69112,8740
Chromosome 4S129,232,0411110,277,976129,232,0418,2900
Chromosome 5L173,538,7231129,552,375173,538,72317,6410
Chromosome 5S137,560,4031103,445,200137,560,40313,8590
Chromosome 6L156,950,2751134,155,063156,950,27510,0620
Chromosome 6S136,910,3751109,207,253136,910,37511,1380
Chromosome 7L135,822,2981108,311,853135,822,29811,7210
Chromosome 7S104,446,417184,893,365104,446,4178,0850
Chromosome 8L122,479,756195,119,195122,479,75611,5730
Chromosome 8S104,585,571187,264,495104,585,5717,5720
Chromosome 9_10L133,323,6041103,210,955133,323,60412,3430
Chromosome 9_10S109,315,980186,075,163109,315,9809,7330
unplaced106,334,24623,41771,443,01518,43215,2810