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ASM2922864v1

Organism name:
Gammaproteobacteria bacterium Milos-ODIII6 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Milos-ODIII6
BioSample:
SAMN32112223
BioProject:
PRJNA910104
Submitter:
Woods Hole Oceanographic Institution
Date:
2023/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_029228645.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPTHR01
Assembly method:
SPAdes v. 3.7.1
Expected final version:
yes
Genome coverage:
103.0x
Sequencing technology:
Illumina MiSeq

IDs: 16187201 [UID] 41495058 [GenBank]

See Genome Information for Gammaproteobacteria bacterium Milos-ODIII6

History (Show revision history)

Comment

Bacteria and source DNA available from Stefan Sievert, Woods Hole Oceanographic Institution, 266 Woods Hole Road, 02540 Falmouth, MA

Global statistics

Total sequence length3,528,599
Total ungapped length3,528,599
Number of contigs25
Contig N50245,984
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,528,599253,528,599245,98400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gammaproteobacteria bacterium Milos-ODIII6Gammaproteobacteria bacterium Milos-ODIII6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004341245.1Plasticicumulans lactativoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.320.890.72

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena