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Source database (GenBank or RefSeq) File type

Loxafr3.0

Organism name:

Loxodonta africana (African savanna elephant)

Isolate:

ISIS603380

Sex:

female

BioSample:

SAMN02953622

BioProject:

PRJNA12569

Submitter:

Broad Institute

Date:

2009/07/15

Synonyms:

loxArf3

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000001905.1 (latest)

RefSeq assembly accession:

GCF_000001905.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT
Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

AAGU03

IDs: 299248 [UID] 3288 [GenBank] 299248 [RefSeq]

See Genome Information for Loxodonta africana

Pathogen Detection Resources

There are 10 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001905.1	≠	GCF_000001905.1	Loxafr3.0	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Assembly Name: Loxafr3.0
Genome Coverage: 7x
Sequencing Technology: Sanger; ABI

Global statistics

Total sequence length	3,196,738,035
Total ungapped length	3,118,542,542
Gaps between scaffolds	0
Number of scaffolds	2,352
Scaffold N50	46,401,353
Scaffold L50	21
Number of contigs	95,866
Contig N50	69,023
Contig L50	13,607
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	95,866

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Mitochondrion MT	n/a	n/a	n/a	1
unplaced	n/a	n/a	n/a	2,351

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,196,738,035	2,352	3,118,542,542	46,401,353	93,514	0
Mitochondrion MT	AllAssembled moleculeUnlocalized scaffolds	16,799016,799	101	16,799016,799	16,799016,799	000	000
unplaced	Assembled molecule	3,196,721,236	2,351	3,118,525,743	46,401,353	93,514	0

Assembly

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Download Assembly

Loxafr3.0

See Genome Information for Loxodonta africana

Pathogen Detection Resources

There are 10 assemblies for this organism

History (Show revision history)

Comment

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