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MonDom5

Organism name:
Monodelphis domestica (gray short-tailed opossum)
BioSample:
SAMN02953611
BioProject:
PRJNA12561
Submitter:
The Genome Sequencing Platform, The Genome Assembly Team
Date:
2007/01/25
Release type:
Minor
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000002295.1 (latest)
RefSeq assembly accession:
GCF_000002295.2 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 122 unplaced scaffolds
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AAFR03

IDs: 237648 [UID] 279808 [GenBank] 237648 [RefSeq]

See Genome Information for Monodelphis domestica

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,600,487,649
Total ungapped length3,501,643,220
Gaps between scaffolds0
Number of scaffolds5,137
Scaffold N50527,952,102
Scaffold L503
Number of contigs72,811
Contig N50107,990
Contig L509,459
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)72,811

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000000155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000368.1=NC_008801.10
Chromosome 2CM000369.1=NC_008802.10
Chromosome 3CM000370.1=NC_008803.10
Chromosome 4CM000371.1=NC_008804.10
Chromosome 5CM000372.1=NC_008805.10
Chromosome 6CM000373.1=NC_008806.10
Chromosome 7CM000374.1=NC_008807.10
Chromosome 8CM000375.1=NC_008808.10
Chromosome XCM000376.1=NC_008809.10
unplacedn/an/an/a5,128

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,600,487,6495,1373,501,643,220527,952,10267,6760
Chromosome 1748,055,1611733,412,987748,055,16113,5840
Chromosome 2541,556,2831527,981,726541,556,28310,8000
Chromosome 3527,952,1021515,087,230527,952,1029,7520
Chromosome 4435,153,6931422,697,471435,153,6938,3090
Chromosome 5304,825,3241298,042,893304,825,3244,9780
Chromosome 6292,091,7361284,524,573292,091,7365,3410
Chromosome 7260,857,9281254,715,620260,857,9284,0140
Chromosome 8312,544,9021303,158,764312,544,9025,5610
Chromosome X79,335,909172,972,16479,335,9091,9670
unplaced98,114,6115,12889,049,79274,6973,3700