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Source database (GenBank or RefSeq) File type

OryCun2.0

Organism name:

Oryctolagus cuniculus (rabbit)

Infraspecific name:

Breed: Thorbecke inbred

Sex:

female

BioSample:

SAMN02953624

BioProject:

PRJNA12819

Submitter:

The Genome Sequencing Platform, The Assembly Computation and Development Core Team

Date:

2009/10/20

Synonyms:

oryCun2

Release type:

Minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000003625.1 (latest)

RefSeq assembly accession:

GCF_000003625.3 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT

Data displayed for GenBank version

WGS Project:

AAGW02

IDs: 182491 [UID] 5128 [GenBank] 1097738 [RefSeq]

See Genome Information for Oryctolagus cuniculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000003625.1	≠	GCF_000003625.3	OryCun2.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000003625.1	≠	GCF_000003625.2	OryCun2.0	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Assembly Name: OryCun2.0
Genome Coverage: 7.48X
Sequencing Technology: ABI

Global statistics

Total sequence length	2,737,473,256
Total ungapped length	2,604,006,039
Gaps between scaffolds	83
Number of scaffolds	3,318
Scaffold N50	35,972,871
Scaffold L50	22
Number of contigs	84,024
Contig N50	64,648
Contig L50	12,076
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	84,024

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000790.1	=	NC_013669.1	0
Chromosome 2	CM000791.1	=	NC_013670.1	0
Chromosome 3	CM000792.1	=	NC_013671.1	0
Chromosome 4	CM000793.1	=	NC_013672.1	0
Chromosome 5	CM000794.1	=	NC_013673.1	0
Chromosome 6	CM000795.1	=	NC_013674.1	0
Chromosome 7	CM000796.1	=	NC_013675.1	0
Chromosome 8	CM000797.1	=	NC_013676.1	0
Chromosome 9	CM000798.1	=	NC_013677.1	0
Chromosome 10	CM000799.1	=	NC_013678.1	0
Chromosome 11	CM000800.1	=	NC_013679.1	0
Chromosome 12	CM000801.1	=	NC_013680.1	0
Chromosome 13	CM000802.1	=	NC_013681.1	0
Chromosome 14	CM000803.1	=	NC_013682.1	0
Chromosome 15	CM000804.1	=	NC_013683.1	0
Chromosome 16	CM000805.1	=	NC_013684.1	0
Chromosome 17	CM000806.1	=	NC_013685.1	0
Chromosome 18	CM000807.1	=	NC_013686.1	0
Chromosome 19	CM000808.1	=	NC_013687.1	0
Chromosome 20	CM000809.1	=	NC_013688.1	0
Chromosome 21	CM000810.1	=	NC_013689.1	0
Chromosome X	CM000811.1	=	NC_013690.1	0
Mitochondrion MT	n/a	n/a	n/a	1
unplaced	n/a	n/a	n/a	3,218

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,737,473,256	3,318	2,604,006,039	35,972,871	80,706	83
Chromosome 1	Assembled molecule	194,850,757	6	187,850,971	50,100,027	5,548	5
Chromosome 2	Assembled molecule	174,332,312	5	168,611,541	70,425,676	4,651	4
Chromosome 3	Assembled molecule	155,691,105	4	150,151,728	56,390,426	4,114	3
Chromosome 4	Assembled molecule	91,394,100	7	86,834,645	16,237,178	2,631	6
Chromosome 5	Assembled molecule	37,992,211	6	34,256,682	13,671,961	900	5
Chromosome 6	Assembled molecule	27,502,587	7	23,945,210	5,984,881	710	6
Chromosome 7	Assembled molecule	173,684,459	5	167,700,667	88,078,035	4,682	4
Chromosome 8	Assembled molecule	111,795,807	3	106,796,365	63,216,855	3,105	2
Chromosome 9	Assembled molecule	116,251,907	4	111,316,666	30,315,085	2,958	3
Chromosome 10	Assembled molecule	47,997,241	3	44,359,525	36,989,862	1,143	3
Chromosome 11	Assembled molecule	87,554,214	2	82,896,087	52,325,183	2,317	1
Chromosome 12	Assembled molecule	155,355,395	6	149,248,319	53,586,363	4,498	5
Chromosome 13	Assembled molecule	143,360,832	6	137,562,892	107,883,304	4,228	5
Chromosome 14	Assembled molecule	163,896,628	4	157,601,683	67,671,583	4,762	3
Chromosome 15	Assembled molecule	109,054,052	4	103,835,217	62,655,278	3,073	4
Chromosome 16	Assembled molecule	84,478,945	3	79,962,046	59,679,677	2,288	2
Chromosome 17	Assembled molecule	85,008,467	3	80,652,684	61,680,845	2,315	2
Chromosome 18	Assembled molecule	69,800,736	8	65,500,121	35,972,871	1,848	8
Chromosome 19	Assembled molecule	57,279,966	2	53,288,568	34,789,551	1,716	2
Chromosome 20	Assembled molecule	33,191,332	2	29,755,506	20,869,188	733	2
Chromosome 21	Assembled molecule	15,578,276	4	12,326,601	3,918,464	438	4
Chromosome X	Assembled molecule	111,700,775	5	106,137,172	33,683,086	3,339	4
Mitochondrion MT	AllAssembled moleculeUnlocalized scaffolds	27,691027,691	101	27,691027,691	27,691027,691	000	000
unplaced	Assembled molecule	489,693,461	3,218	463,387,452	1,225,893	18,709	0

Assembly

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OryCun2.0

See Genome Information for Oryctolagus cuniculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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