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12X

Organism name:
Vitis vinifera (wine grape)
Infraspecific name:
Cultivar: PN40024
BioSample:
SAMEA2272750
BioProject:
PRJEA18785
Submitter:
International Grape Genome Program
Date:
2009/12/07
Release type:
Minor
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000003745.2 (latest)
RefSeq assembly accession:
GCF_000003745.3 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 6 unplaced scaffolds
  • Only in RefSeq: chromosomes MT and Pltd
  • Data displayed for GenBank version
WGS Project:
CAAP03

IDs: 226431 [UID] 313298 [GenBank] 1387078 [RefSeq]

See Genome Information for Vitis vinifera

Pathogen Detection Resources

There are 19 assemblies for this organism

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History (Show revision history)

Comment

This is a 'working draft' sequence, generated by whole genome shotgun. This assembly was made at a 12X coverage of the genome, sequenced by Sanger method. Sequencing effort has been performed by GENOSCOPE, CRIBI (Consortium VIGNA) and IGA. More ... information available at http://www.genoscope.cns.fr/vitis and http://www.vitisgenome.it/ and http://www.appliedgenomics.org/ Email: seqref@genoscope.cns.fr.  more

Global statistics

Total sequence length485,326,422
Total ungapped length470,268,414
Gaps between scaffolds154
Number of scaffolds2,065
Scaffold N503,426,264
Scaffold L5042
Number of contigs14,655
Contig N50102,674
Contig L501,365
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)14,665

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000003755.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1FN597015.1=NC_012007.31
Chromosome 2FN597017.1=NC_012008.30
Chromosome 3FN597018.1=NC_012009.31
Chromosome 4FN597020.1=NC_012010.32
Chromosome 5FN597022.1=NC_012011.31
Chromosome 6FN597024.1=NC_012012.30
Chromosome 7FN597025.1=NC_012013.310
Chromosome 8FN597027.1=NC_012014.30
Chromosome 9FN597028.1=NC_012015.31
Chromosome 10FN597030.1=NC_012016.35
Chromosome 11FN597032.1=NC_012017.32
Chromosome 12FN597034.1=NC_012018.31
Chromosome 13FN597036.1=NC_012019.34
Chromosome 14FN597038.1=NC_012020.30
Chromosome 15FN597039.1=NC_012021.30
Chromosome 16FN597040.1=NC_012022.34
Chromosome 17FN597042.1=NC_012023.31
Chromosome 18FN597044.1=NC_012024.35
Chromosome 19FN597046.1=NC_012025.30
chrUnFN597047.1n/an/a0
Chromosome chr1_randomFN597016.1n/an/a0
Chromosome chr3_randomFN597019.1n/an/a0
Chromosome chr4_randomFN597021.1n/an/a0
Chromosome chr5_randomFN597023.1n/an/a0
Chromosome chr7_randomFN597026.1n/an/a0
Chromosome chr9_randomFN597029.1n/an/a0
Chromosome chr10_randomFN597031.1n/an/a0
Chromosome chr11_randomFN597033.1n/an/a0
Chromosome chr12_randomFN597035.1n/an/a0
Chromosome chr13_randomFN597037.1n/an/a0
Chromosome chr16_randomFN597041.1n/an/a0
Chromosome chr17_randomFN597043.1n/an/a0
Chromosome chr18_randomFN597045.1n/an/a0
unplacedn/an/an/a1,854

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule485,326,4222,065470,268,4143,426,26412,590154
Chromosome 1AllAssembled moleculeUnlocalized scaffolds23,606,57223,037,639568,9331110123,106,12322,583,261522,8626,551,4326,551,432568,93340639016990
Chromosome 2Assembled molecule18,779,8441018,342,5294,456,2624049
Chromosome 3AllAssembled moleculeUnlocalized scaffolds20,562,60819,341,8621,220,7461110120,171,03518,971,1411,199,8942,412,6202,412,6201,220,74642439628990
Chromosome 4AllAssembled moleculeUnlocalized scaffolds23,943,44323,867,70675,737108223,432,32123,358,41973,9024,659,2884,659,28838,7314524466770
Chromosome 5AllAssembled moleculeUnlocalized scaffolds25,442,88025,021,643421,2371211124,812,87324,447,118365,7552,959,7562,959,756421,237567561610100
Chromosome 6Assembled molecule21,508,407420,926,8087,659,4394483
Chromosome 7AllAssembled moleculeUnlocalized scaffolds22,469,14521,026,6131,442,53224141021,837,97120,530,6421,307,3293,837,2403,837,240210,49666852014813130
Chromosome 8Assembled molecule22,385,789722,022,4583,764,7873906
Chromosome 9AllAssembled moleculeUnlocalized scaffolds23,494,54323,006,712487,83165122,838,37922,361,133477,2465,191,2865,191,286487,83151450014440
Chromosome 10AllAssembled moleculeUnlocalized scaffolds18,928,55718,140,952787,605138518,373,12517,631,779741,3469,678,6489,678,648440,53241838137770
Chromosome 11AllAssembled moleculeUnlocalized scaffolds20,100,92419,818,926281,998119219,580,91019,375,088205,8222,910,9132,910,913225,64547545025880
Chromosome 12AllAssembled moleculeUnlocalized scaffolds24,268,53222,702,3071,566,2251110123,867,59622,322,6341,544,9622,802,0533,620,4231,566,22551747245990
Chromosome 13AllAssembled moleculeUnlocalized scaffolds27,663,01924,396,2553,266,7641915426,998,80623,827,8223,170,9841,949,1612,215,5031,052,2956035257814140
Chromosome 14Assembled molecule30,274,2771229,713,3843,618,37060111
Chromosome 15Assembled molecule20,304,914619,826,4973,203,6654875
Chromosome 16AllAssembled moleculeUnlocalized scaffolds22,791,87622,053,297738,579128421,949,14321,280,077669,0663,498,4973,498,497254,68652850325770
Chromosome 17AllAssembled moleculeUnlocalized scaffolds17,956,66117,126,926829,73543117,501,52916,685,054816,47513,101,95213,101,952829,73531130110220
Chromosome 18AllAssembled moleculeUnlocalized scaffolds34,528,09029,360,0875,168,0031712533,600,92428,570,6265,030,2982,066,5843,426,2641,312,92066953113811110
Chromosome 19Assembled molecule24,021,8531123,393,1794,235,57553910
unplacedAssembled molecule42,294,4881,85437,972,824131,1283,1690