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Source database (GenBank or RefSeq) File type

Bfl_VNyyK

Organism name:

Branchiostoma floridae (Florida lancelet)

Infraspecific name:

Strain: S238N-H82

Sex:

male

BioSample:

SAMN02953694

BioProject:

PRJNA20249

Submitter:

DOE Joint Genome Institute

Date:

2020/04/29

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000003815.2 (latest)

RefSeq assembly accession:

GCF_000003815.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

ABEP03

Assembly method:

Arachne v. 20071016; HiRise v. 2016

Expected final version:

yes

Genome coverage:

10.32x

Sequencing technology:

Sanger; Illumina

IDs: 7049231 [UID] 19352338 [GenBank] 21319168 [RefSeq]

See Genome Information for Branchiostoma floridae

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000003815.2	≠	GCF_000003815.2	Bfl_VNyyK	Chromosome	Latest GenBank, Latest RefSeq
GCA_000003815.1	=	GCF_000003815.1	Version 2	Scaffold	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	513,460,931
Total ungapped length	487,128,935
Gaps between scaffolds	0
Number of scaffolds	432
Scaffold N50	25,441,410
Scaffold L50	9
Number of contigs	22,996
Contig N50	50,413
Contig L50	2,806
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	432

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM022886.1	=	NC_049979.1	0
Chromosome 2	CM022887.1	=	NC_049980.1	0
Chromosome 3	CM022888.1	=	NC_049981.1	0
Chromosome 4	CM022889.1	=	NC_049982.1	0
Chromosome 5	CM022890.1	=	NC_049983.1	0
Chromosome 6	CM022891.1	=	NC_049984.1	0
Chromosome 7	CM022892.1	=	NC_049985.1	0
Chromosome 8	CM022893.1	=	NC_049986.1	0
Chromosome 9	CM022894.1	=	NC_049987.1	0
Chromosome 10	CM022895.1	=	NC_049988.1	0
Chromosome 11	CM022896.1	=	NC_049989.1	0
Chromosome 12	CM022897.1	=	NC_049990.1	0
Chromosome 13	CM022898.1	=	NC_049991.1	0
Chromosome 14	CM022899.1	=	NC_049992.1	0
Chromosome 15	CM022900.1	=	NC_049993.1	0
Chromosome 16	CM022901.1	=	NC_049994.1	0
Chromosome 17	CM022902.1	=	NC_049995.1	0
Chromosome 18	CM022903.1	=	NC_049996.1	0
Chromosome 19	CM022904.1	=	NC_049997.1	0
unplaced	n/a	n/a	n/a	412

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	513,445,848	431	487,113,852	25,441,410	22,564
Chromosome 1	35,335,272	1	33,491,066	35,335,272	1,572
Chromosome 2	35,136,500	1	33,488,638	35,136,500	1,591
Chromosome 3	34,247,348	1	32,368,134	34,247,348	1,511
Chromosome 4	34,244,393	1	32,127,927	34,244,393	1,532
Chromosome 5	29,550,017	1	28,181,524	29,550,017	1,327
Chromosome 6	28,086,088	1	26,888,056	28,086,088	1,114
Chromosome 7	25,954,402	1	24,658,075	25,954,402	1,117
Chromosome 8	25,575,982	1	24,252,549	25,575,982	1,051
Chromosome 9	25,441,410	1	23,949,290	25,441,410	1,082
Chromosome 10	23,931,428	1	22,633,802	23,931,428	1,108
Chromosome 11	23,529,748	1	22,545,830	23,529,748	897
Chromosome 12	22,973,701	1	21,954,080	22,973,701	990
Chromosome 13	22,407,120	1	21,594,865	22,407,120	879
Chromosome 14	21,813,864	1	20,784,052	21,813,864	932
Chromosome 15	21,514,203	1	20,569,292	21,514,203	832
Chromosome 16	19,152,309	1	18,322,187	19,152,309	722
Chromosome 17	19,122,194	1	18,387,257	19,122,194	810
Chromosome 18	18,554,083	1	17,753,713	18,554,083	650
Chromosome 19	17,116,508	1	16,307,445	17,116,508	785
unplaced	29,759,278	412	26,856,070	314,892	2,062

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Bfl_VNyyK

See Genome Information for Branchiostoma floridae

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear