U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



v.1.0

Organism name:
Arabidopsis lyrata subsp. lyrata (lyrate rockcress)
BioSample:
SAMN02981250
BioProject:
PRJNA41137
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2016/11/26
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000004255.1 (latest)
RefSeq assembly accession:
GCF_000004255.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
ADBK01
Assembly method:
Arachne v. before 2009
Genome coverage:
8x
Sequencing technology:
Sanger

IDs: 1085921 [UID] 111458 [GenBank] 4425008 [RefSeq]

See Genome Information for Arabidopsis lyrata

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Alyrata
JGI Project ID: 4992920
The strain MN47 was provided by June Nasrallah and is available from the Arabidopsis Biological Stock Center at Ohio State (ABRC)
The DNA was prepared by Yalong Guo (ya-long.guo@tuebingen.mpg.de)
Contacts: Detlef Weigel, MPI for Developmental Biology, ... Tubingen, Germany (weigel@weigelworld.org)
 Igor Grigoriev, DOE Joint Genome Institute (ivgrigoriev@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length206,822,858
Total ungapped length183,862,724
Gaps between scaffolds0
Number of scaffolds696
Scaffold N5024,464,547
Scaffold L504
Number of contigs3,646
Contig N50227,391
Contig L50247
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)3,646

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced206,667,935695183,707,80124,464,5472,9500
MoleculeTotal
Length
Chloroplast Pltd154,923