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Source database (GenBank or RefSeq) File type

Brachypodium_distachyon_v3.0

Organism name:

Brachypodium distachyon (stiff brome)

Infraspecific name:

Strain: Bd21

BioSample:

SAMN02981254

BioProject:

PRJNA32607

Submitter:

JGI-PGF

Date:

2018/01/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000005505.4 (latest)

RefSeq assembly accession:

GCF_000005505.3 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

ADDN03

Assembly method:

ARACHNE v. 20071016_modified

Genome coverage:

9.43x

Sequencing technology:

ABI 3739

IDs: 1598401 [UID] 6116248 [GenBank] 6122128 [RefSeq]

See Genome Information for Brachypodium distachyon

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000005505.4	≠	GCF_000005505.3	Brachypodium_distachyon_v3.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000005505.3	n/a	n/a	Brachypodium_distachyon_v3.0	Chromosome	GenBank suppressed
GCA_000005505.2	≠	GCF_000005505.2	Brachypodium_distachyon_v2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000005505.1	≠	GCF_000005505.1	v1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	271,298,618
Total ungapped length	270,874,660
Gaps between scaffolds	4
Number of scaffolds	15
Scaffold N50	30,223,662
Scaffold L50	4
Number of contigs	36
Contig N50	21,988,513
Contig L50	5
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	36

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000880.3	=	NC_016131.3	1
Chromosome 2	CM000881.3	=	NC_016132.3	0
Chromosome 3	CM000882.3	=	NC_016133.3	0
Chromosome 4	CM000883.3	=	NC_016134.3	0
Chromosome 5	CM000884.3	=	NC_016135.3	0
unplaced	n/a	n/a	n/a	4

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	271,163,419	14	270,739,461	30,223,662	21	4
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	75,117,72975,071,54546,184	321	75,017,72974,971,54546,184	37,944,85437,944,85446,184	000	110
Chromosome 2	Assembled molecule	59,130,575	2	59,030,475	30,223,662	1	1
Chromosome 3	Assembled molecule	59,640,145	2	59,529,645	34,283,138	6	1
Chromosome 4	Assembled molecule	48,594,894	2	48,482,985	27,748,311	12	1
Chromosome 5	Assembled molecule	28,630,136	1	28,628,687	28,630,136	2	0
unplaced	Assembled molecule	49,940	4	49,940	20,560	0	0

Assembly

Genome Assembly

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Brachypodium_distachyon_v3.0

See Genome Information for Brachypodium distachyon

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear