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ASM1588v1

Organism name:
Actinobacillus pleuropneumoniae serovar 5b str. L20 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: L20
BioSample:
SAMN02603665
BioProject:
PRJNA18221
Submitter:
National Research Council of Canada
Date:
2007/02/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000015885.1 (latest)
RefSeq assembly accession:
GCF_000015885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 36988 [UID] 16688 [GenBank] 36988 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 85 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/06/2023 00:52:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,165
CDSs (total)::2,080
Genes (coding)::2,024
CDSs (with protein)::2,024
Genes (RNA)::85
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::27 of 56
Pseudo Genes (incomplete)::15 of 56
Pseudo Genes (internal stop)::22 of 56
Pseudo Genes (multiple problems)::7 of 56
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,274,482
Total ungapped length2,274,482
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000015895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000569.1=NC_009053.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,274,482

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniae serovar 5b str. L20Actinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000167095.1Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000167095.1Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8796.2795.52
Best-match type99.8796.2795.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna