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ASM2104v1

Organism name:
Azotobacter vinelandii DJ (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DJ; ATCC BAA-1303
BioSample:
SAMN02604349
BioProject:
PRJNA16
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2009/04/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000021045.1 (latest)
RefSeq assembly accession:
GCF_000021045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 42068 [UID] 21848 [GenBank] 42068 [RefSeq]

See Genome Information for Azotobacter vinelandii

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Draft sequencing of this genome performed by the US DOE Joint Genome Institute in 2002. Genome finishing performed by the Monsanto Company in 2005-2006, as part of the Azotobacter vinelandii project consortium (www.azotobacter.org).
The annotation was added by the NCBI ... Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/19/2022 12:06:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,914
CDSs (total)::4,828
Genes (coding)::4,676
CDSs (with protein)::4,676
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::74 of 152
Pseudo Genes (incomplete)::106 of 152
Pseudo Genes (internal stop)::17 of 152
Pseudo Genes (multiple problems)::39 of 152
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,365,318
Total ungapped length5,365,318
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000021055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001157.1=NC_012560.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,365,318

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Azotobacter vinelandii DJAzotobacter vinelandii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_027922225.1Azotobacter vinelandiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_027922225.1Azotobacter vinelandiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9996.6099.68
Best-match type99.9996.6099.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna