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Source database (GenBank or RefSeq) File type

AnoCar2.0

Organism name:

Anolis carolinensis (green anole)

BioSample:

SAMN02981230

BioProject:

PRJNA18787

Submitter:

Broad Institute

Date:

2011/01/10

Synonyms:

anoCar2

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000090745.2 (latest)

RefSeq assembly accession:

GCF_000090745.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AAWZ02

Assembly method:

Arachne v. 3.0.0

Genome coverage:

7.10x

Sequencing technology:

ABI

IDs: 249188 [UID] 305698 [GenBank] 249188 [RefSeq]

See Genome Information for Anolis carolinensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000090745.2	≠	GCF_000090745.2	AnoCar2.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000090745.2	=	GCF_000090745.1	AnoCar2.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000090745.1	n/a	n/a	AnoCar2.0	Chromosome	Replaced GenBank

Comment

The majority of the reads were generated from a female Anolis (JBL SC #1) provided by Jonathan Losos, Harvard University. In addition, BAC-end reads were generated from a BAC library derived from a male anole (ID #5) provided by ... Travis Glenn, University of Georgia. The mitochondrion is GenBank accession number EU747728  more

Global statistics

Total sequence length	1,799,143,587
Total ungapped length	1,701,353,770
Gaps between scaffolds	189
Number of scaffolds	6,646
Scaffold N50	4,033,265
Scaffold L50	119
Number of contigs	41,987
Contig N50	79,867
Contig L50	6,217
Total number of chromosomes and plasmids	14
Number of component sequences (WGS or clone)	41,987

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000937.1	=	NC_014776.1	0
Chromosome 2	CM000938.1	=	NC_014777.1	0
Chromosome 3	CM000939.1	=	NC_014778.1	0
Chromosome 4	CM000940.1	=	NC_014779.1	0
Chromosome 5	CM000941.1	=	NC_014780.1	0
Chromosome 6	CM000942.1	=	NC_014781.1	0
Linkage Group a	CM000943.1	=	NC_014782.1	0
Linkage Group b	CM000944.1	=	NC_014783.1	0
Linkage Group c	CM000945.1	=	NC_014784.1	0
Linkage Group d	CM000946.1	=	NC_014785.1	0
Linkage Group f	CM000947.1	=	NC_014786.1	0
Linkage Group g	CM000948.1	=	NC_014787.1	0
Linkage Group h	CM000949.1	=	NC_014788.1	0
unplaced	n/a	n/a	n/a	6,443

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,799,126,364	6,645	1,701,336,547	4,033,265	35,341	189
Chromosome 1	263,920,458	56	252,089,865	4,920,547	4,448	55
Chromosome 2	199,619,895	38	190,168,590	6,834,066	3,604	37
Chromosome 3	204,416,410	31	195,408,267	7,537,958	3,418	30
Chromosome 4	156,502,444	29	148,783,213	7,296,843	2,610	28
Chromosome 5	150,641,573	27	142,189,675	5,498,715	2,531	26
Chromosome 6	80,741,955	11	75,533,203	12,765,047	1,442	10
Linkage Group a	7,025,928	2	3,821,440	3,479,988	100	1
Linkage Group b	3,271,537	1	3,224,372	3,271,537	59	0
Linkage Group c	9,478,905	3	9,141,753	2,426,545	204	2
Linkage Group d	1,094,478	1	1,057,788	1,094,478	23	0
Linkage Group f	4,257,874	1	3,992,319	4,257,874	132	0
Linkage Group g	424,765	1	397,894	424,765	12	0
Linkage Group h	248,369	1	239,172	248,369	8	0
unplaced	717,481,773	6,443	675,288,996	1,213,350	16,750	0

Assembly

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AnoCar2.0

See Genome Information for Anolis carolinensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear