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Source database (GenBank or RefSeq) File type

OglaRS2

Organism name:

Oryza glaberrima (African rice)

BioSample:

SAMN02981267

BioProject:

PRJNA13765

Submitter:

The Oryza Map Alignment Project (OMAP)

Date:

2021/03/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000147395.3 (latest)

RefSeq assembly accession:

GCF_000147395.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

ADWL02

Assembly method:

CANU v. 1.5

Expected final version:

Genome coverage:

130.0x

Sequencing technology:

PacBio

IDs: 9506311 [UID] 25500358 [GenBank] 37437228 [RefSeq]

See Genome Information for Oryza glaberrima

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000147395.3	≠	GCF_000147395.1	OglaRS2	Chromosome	Latest GenBank, Latest RefSeq
GCA_000147395.2	n/a	n/a	Oryza_glaberrima_V1	Scaffold	Replaced GenBank
GCA_000147395.1	n/a	n/a	Oryza_glaberrima_V1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	347,453,675
Total ungapped length	347,452,375
Gaps between scaffolds	13
Number of scaffolds	73
Scaffold N50	15,217,274
Scaffold L50	10
Number of contigs	73
Contig N50	15,217,274
Contig L50	10
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	73

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM029708.1	=	NC_068326.1	0
Chromosome 2	CM029709.1	=	NC_068327.1	0
Chromosome 3	CM029710.1	=	NC_068328.1	0
Chromosome 4	CM029711.1	=	NC_068329.1	0
Chromosome 5	CM029712.1	=	NC_068330.1	0
Chromosome 6	CM029713.1	=	NC_068331.1	0
Chromosome 7	CM029714.1	=	NC_068332.1	0
Chromosome 8	CM029715.1	=	NC_068333.1	0
Chromosome 9	CM029716.1	=	NC_068334.1	0
Chromosome 10	CM029717.1	=	NC_068335.1	0
Chromosome 11	CM029718.1	=	NC_068336.1	0
Chromosome 12	CM029719.1	=	NC_068337.1	0
unplaced	n/a	n/a	n/a	47

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Unspanned Gaps
All	347,321,046	72	347,319,746	15,217,274	13
Chromosome 1	39,656,875	2	39,656,775	24,092,095	1
Chromosome 2	34,451,706	3	34,451,506	13,308,331	2
Chromosome 3	35,526,804	2	35,526,704	19,074,635	1
Chromosome 4	31,572,834	1	31,572,834	31,572,834	0
Chromosome 5	26,274,045	2	26,273,945	15,628,760	1
Chromosome 6	29,275,208	2	29,275,108	15,217,274	1
Chromosome 7	26,599,614	2	26,599,514	15,266,279	1
Chromosome 8	25,472,747	2	25,472,647	14,573,366	1
Chromosome 9	21,796,211	2	21,796,111	19,440,488	1
Chromosome 10	22,418,184	3	22,417,984	8,154,767	2
Chromosome 11	26,393,634	2	26,393,534	14,757,719	1
Chromosome 12	25,020,143	2	25,020,043	15,088,061	1
unplaced	2,863,041	47	2,863,041	82,446	0

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OglaRS2

See Genome Information for Oryza glaberrima

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear