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Cavpor3.0

Organism name:
Cavia porcellus (domestic guinea pig)
Infraspecific name:
Strain: inbred line 2N
Sex:
female
BioSample:
SAMN02981223
BioProject:
PRJNA12583
Submitter:
The Genome Sequencing Platform, The Genome Assembly Team
Date:
2008/03/03
Synonyms:
cavPor3
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000151735.1 (latest)
RefSeq assembly accession:
GCF_000151735.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AAKN02
Assembly method:
unknown v. before 2008
Genome coverage:
6.8x
Sequencing technology:
Sanger

IDs: 304568 [UID] 175118 [GenBank] 304568 [RefSeq]

See Genome Information for Cavia porcellus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

This version of the project, Cavpor3.0, represents 6.8x coverage of the genome

Global statistics

Total sequence length2,723,202,840
Total ungapped length2,663,352,932
Gaps between scaffolds0
Number of scaffolds3,143
Scaffold N5027,942,054
Scaffold L5028
Number of contigs61,603
Contig N5080,583
Contig L509,305
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61,603

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,723,202,8403,1432,663,352,93227,942,05458,4600