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ASM16488v1

Organism name:
Ketogulonicigenium vulgare Y25 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Y25
BioSample:
SAMN02603012
BioProject:
PRJNA51787
Submitter:
Beijing Institute of Biotechnology
Date:
2010/10/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000164885.1 (latest)
RefSeq assembly accession:
GCF_000164885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 275248 [UID] 199798 [GenBank] 275248 [RefSeq]

See Genome Information for Ketogulonicigenium vulgare

There are 6 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria Y25 is available from Weisheng Pharmaceutical Co. Ltd., Shijiazhuang Pharm Group.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/25/2023 01:25:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,327
CDSs (total)::3,249
Genes (coding)::3,091
CDSs (with protein)::3,091
Genes (RNA)::78
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::158
CDSs (without protein)::158
Pseudo Genes (ambiguous residues)::0 of 158
Pseudo Genes (frameshifted)::132 of 158
Pseudo Genes (incomplete)::26 of 158
Pseudo Genes (internal stop)::12 of 158
Pseudo Genes (multiple problems)::8 of 158
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,288,404
Total ungapped length3,288,404
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000164895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002224.1=NC_014625.1
Plasmid pYP1CP002225.1=NC_014621.1
Plasmid pYP12CP002226.1=NC_014626.1

Assembly statistics

MoleculeTotal
Length
All3,288,404
Chromosome 2,776,084
Plasmid pYP1268,675
Plasmid pYP12243,645

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ketogulonicigenium vulgare Y25Ketogulonicigenium vulgare

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900111785.1Paracoccus halophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.873.993.28

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena