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Mmur_3.0

Organism name:
Microcebus murinus (gray mouse lemur)
Isolate:
mixed
Sex:
pooled male and female
BioSample:
SAMN06275470
BioProject:
PRJNA19967
Submitter:
Baylor College of Medicine
Date:
2017/02/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000165445.3 (latest)
RefSeq assembly accession:
GCF_000165445.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
ABDC03
Assembly method:
AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1
Genome coverage:
221.6x
Sequencing technology:
Illumina; PacBio RS; PacBio RSII

IDs: 998221 [UID] 4096748 [GenBank] 4121788 [RefSeq]

See Genome Information for Microcebus murinus

Pathogen Detection Resources

History (Show revision history)

Comment

Illumina reads were obtained from isolate #8 (BioSample SAMN03121888) and used to generate the previous version of this genome, GCA_000165445.2 (Mmur_2.0). PacBio data from biosamples SAMN03463713 and SAMN03463714 were used to fill gaps in Mmur_2.0 with PBJelly, creating this ... improved assembly Mmur_3.0. (PacBio data was not used for scaffolding or verifying scaffolds.)  more

Global statistics

Total sequence length2,487,409,138
Total ungapped length2,386,321,955
Gaps between scaffolds0
Number of scaffolds7,678
Scaffold N50108,171,978
Scaffold L5010
Number of contigs50,984
Contig N50210,702
Contig L502,987
Total number of chromosomes and plasmids34
Number of component sequences (WGS or clone)50,983

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000165455.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM007661.1=NC_033660.1231
Chromosome 2CM007662.1=NC_033661.10
Chromosome 3CM007663.1=NC_033662.1285
Chromosome 4CM007664.1=NC_033663.1181
Chromosome 5CM007665.1=NC_033664.1243
Chromosome 6CM007666.1=NC_033665.10
Chromosome 7CM007667.1=NC_033666.1282
Chromosome 8CM007668.1=NC_033667.10
Chromosome 9CM007669.1=NC_033668.1350
Chromosome 10CM007670.1=NC_033669.1206
Chromosome 11CM007671.1=NC_033670.1199
Chromosome 12CM007672.1=NC_033671.1288
Chromosome 13CM007673.1=NC_033672.1218
Chromosome 14CM007674.1=NC_033673.1123
Chromosome 15CM007675.1=NC_033674.1141
Chromosome 16CM007676.1=NC_033675.1155
Chromosome 17CM007677.1=NC_033676.1145
Chromosome 18CM007678.1=NC_033677.1122
Chromosome 19CM007679.1=NC_033678.1209
Chromosome 20CM007680.1=NC_033679.1241
Chromosome 21CM007681.1=NC_033680.10
Chromosome 22CM007682.1=NC_033681.1115
Chromosome 23CM007683.1=NC_033682.175
Chromosome 24CM007684.1=NC_033683.10
Chromosome 25CM007685.1=NC_033684.1137
Chromosome 26CM007686.1=NC_033685.10
Chromosome 27CM007687.1=NC_033686.1136
Chromosome 28CM007688.1=NC_033687.10
Chromosome 29CM007689.1=NC_033688.1133
Chromosome 30CM007690.1=NC_033689.1101
Chromosome 31CM007691.1=NC_033690.1197
Chromosome 32CM007692.1=NC_033691.10
Chromosome XCM007693.1=NC_033692.1218
unplacedn/an/an/a2,913

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,487,392,0247,6772,386,304,861108,171,97843,3050
Chromosome 1AllAssembled moleculeUnlocalized scaffolds115,213,943114,275,543938,4002321231112,579,555111,901,629677,926114,275,543114,275,5435,0471,4501,310140000
Chromosome 2Assembled molecule141,296,4041136,564,730141,296,4042,1350
Chromosome 3AllAssembled moleculeUnlocalized scaffolds120,728,236119,751,181977,0552861285117,527,518116,795,640731,878119,751,181119,751,1814,4651,6601,533127000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds74,562,07473,916,538645,536182118172,672,42272,207,955464,46773,916,53873,916,5384,528896795101000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds117,677,377116,768,492908,8852441243113,814,958113,189,574625,384116,768,492116,768,4924,9101,5741,441133000
Chromosome 6Assembled molecule123,392,4461118,585,563123,392,4461,6170
Chromosome 7AllAssembled moleculeUnlocalized scaffolds109,358,158108,171,9781,186,1802831282104,902,017104,106,513795,504108,171,978108,171,9785,1721,8441,654190000
Chromosome 8Assembled molecule159,902,6091155,649,741159,902,6091,8780
Chromosome 9AllAssembled moleculeUnlocalized scaffolds117,748,705116,334,8311,413,8743511350113,384,859112,375,5651,009,294116,334,831116,334,8315,3251,8221,589233000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds99,233,42098,468,360765,060207120696,573,05596,015,365557,69098,468,36098,468,3604,9161,2161,104112000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds108,932,324108,226,025706,2992001199106,632,684106,089,469543,215108,226,025108,226,0254,4551,02894484000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds109,250,055108,143,0571,106,9982891288106,328,418105,529,203799,215108,143,057108,143,0574,9321,2961,111185000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds87,771,50586,920,293851,212219121885,499,56584,936,393563,17286,920,29386,920,2934,9211,117976141000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds93,703,37293,316,391386,981124112391,591,48691,279,858311,62893,316,39193,316,3914,25883979544000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds78,202,90477,693,121509,783142114175,919,73675,576,948342,78877,693,12177,693,1215,21081874573000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds66,476,75465,901,067575,687156115564,439,07863,997,895441,18365,901,06765,901,0674,5411,1631,07291000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds61,224,41060,697,988526,422146114559,970,61859,575,347395,27160,697,98860,697,9884,59677869880000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds57,629,95257,149,010480,942123112255,776,75755,442,482334,27557,149,01057,149,0104,93774167071000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds83,976,00983,067,054908,955210120980,433,50379,796,800636,70383,067,05483,067,0546,0151,2891,131158000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds73,339,08572,247,4021,091,683242124169,421,12668,743,356677,77072,247,40272,247,4025,4961,4541,232222000
Chromosome 21Assembled molecule31,815,103130,087,71031,815,1037660
Chromosome 22AllAssembled moleculeUnlocalized scaffolds30,712,77130,143,674569,097116111526,876,02626,527,439348,58730,143,67430,143,6746,1272,0351,918117000
Chromosome 23AllAssembled moleculeUnlocalized scaffolds33,417,47433,087,545329,9297617529,755,34029,511,459243,88133,087,54533,087,5455,64549543956000
Chromosome 24Assembled molecule15,088,824114,271,10815,088,8245380
Chromosome 25AllAssembled moleculeUnlocalized scaffolds28,797,16028,148,801648,359138113727,394,81326,998,680396,13328,148,80128,148,8015,745728600128000
Chromosome 26Assembled molecule29,216,678124,886,78429,216,6786470
Chromosome 27AllAssembled moleculeUnlocalized scaffolds37,383,28936,798,880584,409137113635,744,03935,350,370393,66936,798,88036,798,8805,65773464193000
Chromosome 28Assembled molecule12,211,143111,680,20912,211,1432910
Chromosome 29AllAssembled moleculeUnlocalized scaffolds23,950,38123,278,169672,212134113321,557,22921,114,754442,47523,278,16923,278,1696,4281,8271,679148000
Chromosome 30AllAssembled moleculeUnlocalized scaffolds13,329,85212,810,044519,808102110110,997,81910,699,565298,25412,810,04412,810,0446,659893757136000
Chromosome 31AllAssembled moleculeUnlocalized scaffolds48,208,11647,401,472806,644198119746,062,12745,520,357541,77047,401,47247,401,4724,955806662144000
Chromosome 32Assembled molecule9,149,47618,715,2819,149,4762180
Chromosome XAllAssembled moleculeUnlocalized scaffolds145,739,564144,923,918815,6462191218136,620,842136,017,428603,414144,923,918144,923,9184,7653,2953,179116000
unplacedAssembled molecule28,752,4512,91323,388,145826,4563,4170
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT17,114117,09417,11410