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Source database (GenBank or RefSeq) File type

ASM17849v2

Organism name:: Actinobacillus pleuropneumoniae serovar 1 str. 4074 (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 4074
BioSample:: SAMN02469615
BioProject:: PRJNA47291
Submitter:: Huazhong Agricultural University
Date:: 2018/05/02
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000178495.2 (latest)
RefSeq assembly accession:: GCF_000178495.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. RS_HGAP Assembly.2
Expected final version:: yes
Genome coverage:: 500.0x
Sequencing technology:: PacBio

IDs: 1690481 [UID] 6441638 [GenBank] 6450858 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

Pathogen Detection Resources

There are 88 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000178495.2	=	GCF_000178495.2	ASM17849v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000178495.1	=	GCF_000178495.1	ASM17849v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from rzhou@mail.hzau.edu.cn.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000178495.2-RS_2024_03_21
Annotation Date::03/21/2024 05:05:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,219
CDSs (total)::2,134
Genes (coding)::2,083
CDSs (with protein)::2,083
Genes (RNA)::85
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::51
CDSs (without protein)::51
Pseudo Genes (ambiguous residues)::0 of 51
Pseudo Genes (frameshifted)::29 of 51
Pseudo Genes (incomplete)::18 of 51
Pseudo Genes (internal stop)::17 of 51
Pseudo Genes (multiple problems)::13 of 51
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,318,649
Total ungapped length	2,318,649
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.99	100.00	100.00
Best-match type	99.99	100.00	100.00

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ASM17849v2

See Genome Information for Actinobacillus pleuropneumoniae

Pathogen Detection Resources

There are 88 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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