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Aflo_1.1

Organism name:
Apis florea (little honeybee)
Sex:
male
BioSample:
SAMN00009081
BioProject:
PRJNA45871
Submitter:
Baylor College of Medicine
Date:
2012/12/07
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000184785.2 (latest)
RefSeq assembly accession:
GCF_000184785.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AEKZ01
Assembly method:
Newbler v. 2.3-PreRelease-10/19/2009 and Phrap
Genome coverage:
20.5x
Sequencing technology:
454

IDs: 5341821 [UID] 15462358 [GenBank] 15507778 [RefSeq]

See Genome Information for Apis florea

History (Show revision history)

Comment

Contact ncbi-contacts@bcm.tmc.edu for more information.
The DNA source was a single haploid drone (#6) for the 3kb library and a pool of three haploid drones (#3, 5, 8) for the 8kb library. All from Gene Robinson, University of Illinois.
Aflo_1.0 was ... created with 454 Newbler assembler v. 2.3-PreRelease-10/19/2009 for the shotgun sequences, followed by local re-assembly with additional unassembled mate-pairs using Phrap to close additional gaps.

In November 2019 1925 contigs and their corresponding scaffolds were suppressed because they were found to be contaminants, and the assembly was updated to Aflo_1.1, GCA_000184785.2  more

Global statistics

Total sequence length229,015,090
Total ungapped length211,347,123
Gaps between scaffolds0
Number of scaffolds6,984
Scaffold N502,863,240
Scaffold L5022
Number of contigs18,379
Contig N5024,915
Contig L502,398
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)18,379

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced228,997,3966,983211,329,4292,863,24011,3950
MoleculeTotal
Length
Mitochondrion MT17,694