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ASM19079v1

Organism name:
Escherichia coli E1167 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: E1167
BioSample:
SAMN02595400
BioProject:
PRJNA38941
Submitter:
Broad Institute
Date:
2011/03/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000190795.1 (latest)
RefSeq assembly accession:
GCF_000190795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AEHS01
Assembly method:
Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:
17x
Sequencing technology:
454

IDs: 462188 [UID] 248678 [GenBank] 462188 [RefSeq]

See Genome Information for Escherichia coli

There are 256122 assemblies for this organism

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History (Show revision history)

Comment

Source DNA and bacteria available from David M. Gordon (Division of Evolution, Ecology & Genetics, The Australian National University, Canberra, Australia)

Global statistics

Total sequence length4,942,767
Total ungapped length4,918,295
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50620,155
Scaffold L504
Number of contigs87
Contig N50144,457
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)87

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,942,767324,918,295620,155550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli E1167Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2491.1586.95
Best-match type99.2491.1586.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna