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ASM21904v1

Organism name:
Francisella salina (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TX07-7308
BioSample:
SAMN02603541
BioProject:
PRJNA67139
Submitter:
Los Alamos National Laboratory
Date:
2011/06/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000219045.1 (latest)
RefSeq assembly accession:
GCF_000219045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 292298 [UID] 291358 [GenBank] 292298 [RefSeq]

See Genome Information for Francisella salina

History (Show revision history)

Comment

This finished genome sequence was annotated by the automated RAST service (http://rast.nmpdr.org/) with limited manual inspection and clean-up. Source DNA and bacteria available from: Jeannine Petersen, Division of Vector-Borne Infectious Diseases, Centers for Disease Control and Prevention, Fort Collins, ... Colorado 80521, nzp0@cdc.gov. Contacts: Jean F. Challacombe (jchalla@lanl.gov), Cheryl R. Kuske (kuske@lanl.gov)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/15/2024 02:01:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,005
CDSs (total)::1,952
Genes (coding)::1,931
CDSs (with protein)::1,931
Genes (RNA)::53
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::39
ncRNAs::4
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::0 of 21
Pseudo Genes (frameshifted)::12 of 21
Pseudo Genes (incomplete)::5 of 21
Pseudo Genes (internal stop)::9 of 21
Pseudo Genes (multiple problems)::5 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,035,931
Total ungapped length2,035,931
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000219055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002872.1=NC_015696.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,035,931

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Francisella salinaFrancisella salina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008369785.1Francisella marinasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8389.9888.83

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected