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CriGri_1.0

Description:
Genome assembly from the chinese hamster ovary cell line CHO-K1
Organism name:
Cricetulus griseus (Chinese hamster)
BioSample:
SAMN02981352
BioProject:
PRJNA69991
Submitter:
Beijing Genomics Institute
Date:
2011/08/23
Synonyms:
criGriChoV1
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000223135.1 (latest)
RefSeq assembly accession:
GCF_000223135.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AFTD01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
130x
Sequencing technology:
Illumina GA IIx

IDs: 309608 [UID] 301008 [GenBank] 309608 [RefSeq]

See Genome Information for Cricetulus griseus

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Source of DNA is available from ATCC Catalog No. CCL-61

Global statistics

Total sequence length2,399,786,748
Total ungapped length2,318,132,242
Gaps between scaffolds0
Number of scaffolds109,152
Scaffold N501,147,233
Scaffold L50547
Number of contigs265,787
Contig N5039,361
Contig L5016,414
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)265,787

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,399,770,464109,1512,318,115,9581,147,233156,6350
MoleculeTotal
Length
Mitochondrion MT16,284