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LatCha1

Organism name:
Latimeria chalumnae (coelacanth)
Isolate:
SAIAB 97564
BioSample:
SAMN00138723
BioProject:
PRJNA56111
Submitter:
Broad Institute
Date:
2011/09/12
Synonyms:
latCha1
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000225785.1 (latest)
RefSeq assembly accession:
GCF_000225785.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AFYH01
Assembly method:
AllPaths v. R36819
Genome coverage:
77.5x
Sequencing technology:
Illumina HiSeq

IDs: 303548 [UID] 303548 [GenBank] 839168 [RefSeq]

See Genome Information for Latimeria chalumnae

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,860,591,921
Total ungapped length2,183,592,768
Gaps between scaffolds0
Number of scaffolds22,819
Scaffold N50924,513
Scaffold L50830
Number of contigs291,829
Contig N5012,671
Contig L5050,769
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)291,829

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,860,575,51422,8182,183,576,361924,513269,0100
MoleculeTotal
Length
Mitochondrion MT16,407