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PelSin_1.0

Organism name:
Pelodiscus sinensis (Chinese soft-shelled turtle)
Isolate:
Daiwa-1
Sex:
female
BioSample:
SAMN02981371
BioProject:
PRJNA68233
Submitter:
P. sinensis genome project consortium
Date:
2012/07/24
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000230535.1 (latest)
RefSeq assembly accession:
GCF_000230535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AGCU01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
105x
Sequencing technology:
Illumina HiSeq 2000

IDs: 309658 [UID] 309658 [GenBank] 856178 [RefSeq]

See Genome Information for Pelodiscus sinensis

History (Show revision history)

Comment

Global statistics

Total sequence length2,202,483,752
Total ungapped length2,106,639,384
Gaps between scaffolds0
Number of scaffolds19,904
Scaffold N503,350,749
Scaffold L50189
Number of contigs205,380
Contig N5021,993
Contig L5028,686
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)205,380

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,202,466,38819,9032,106,622,0203,350,749185,4760
MoleculeTotal
Length
Mitochondrion MT17,364