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ASM23377v1

Organism name:
Thermovirga lienii DSM 17291 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 17291
BioSample:
SAMN02232060
BioProject:
PRJNA33163
Submitter:
DOE Joint Genome Institute
Date:
2011/11/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_000233775.1 (latest)
RefSeq assembly accession:
GCF_000233775.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454/Illumina

IDs: 316598 [UID] 313488 [GenBank] 316598 [RefSeq]

See Genome Information for Thermovirga lienii

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4085723
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done ... by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Thermovirga lienii Cas60314, DSM 17291
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Norway
environment::Oil fields, Fresh water
num_replicons::2
ref_biomaterial::DSM 17291, ATCC BAA-1197
biotic_relationship::Free living
trophic_level::Chemoorganotroph
rel_to_oxygen::Obligate anaerobe
isol_growth_condt::16825627
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Finished
GOLD Stamp ID::Gi02948
Type Strain::Yes
Greengenes ID::143575
Funding Program::DOE-GEBA 2007
Isolation Site::Production water from an oil well, Norway
Cell Shape::Rod-shaped
Motility::Motile
Sporulation::Nonsporulating
Temperature Range::Thermophile
Temperature Optimum::58C
pH::6.5 - 7.0
Gram Staining::Gram-
Diseases::None
##MIGS-Data-END##

Global statistics

Total sequence length1,999,646
Total ungapped length1,999,646
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000233785.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003096.1=NC_016148.1
Plasmid pTLIE01CP003097.1=NC_016149.1

Assembly statistics

MoleculeTotal
Length
All1,999,646
Chromosome 1,967,774
Plasmid pTLIE0131,872

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermovirga lienii DSM 17291Thermovirga lienii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001687335.1Dissulfuribacter thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.450.560.44

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected