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ASM23879v2

Organism name:
Haemophilus sputorum CCUG 13788 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CCUG 13788
BioSample:
SAMN02393707
BioProject:
PRJNA67089
Submitter:
BiRC
Date:
2011/06/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000238795.2 (latest)
RefSeq assembly accession:
GCF_000238795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFNK01
Assembly method:
Newbler Metrics v. 2.3
Genome coverage:
77x
Sequencing technology:
454

IDs: 323688 [UID] 323668 [GenBank] 323688 [RefSeq]

See Genome Information for Haemophilus sputorum

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,143,543
Total ungapped length2,143,543
Number of contigs87
Contig N50206,614
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)87

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,143,543872,143,543206,61400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus sputorum CCUG 13788Haemophilus sputorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000746485.1Haemophilus parainfluenzaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.3810.1110.15

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected