U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



PunNye1.0

Organism name:
Pundamilia nyererei (bony fishes)
Isolate:
P.nyererei 1_Seehausen
Sex:
female
BioSample:
SAMN00149614
BioProject:
PRJNA60367
Submitter:
Broad Institute
Date:
2011/12/22
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000239375.1 (latest)
RefSeq assembly accession:
GCF_000239375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFNX01
Assembly method:
ALLPATHS-LG v. R37016
Genome coverage:
126x
Sequencing technology:
Illumina HiSeq

IDs: 322348 [UID] 322348 [GenBank] 789258 [RefSeq]

See Genome Information for Pundamilia nyererei

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. The sequenced animal was provided by Dr. Ole Seehausen at the Swiss Federal Institute of Aquatic Science and Technology (Eawag.)

Global statistics

Total sequence length830,133,247
Total ungapped length698,761,080
Gaps between scaffolds0
Number of scaffolds7,236
Scaffold N502,525,540
Scaffold L5093
Number of contigs68,053
Contig N5022,622
Contig L508,701
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68,053

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced830,133,2477,236698,761,0802,525,54060,8170