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HetGla_female_1.0

Description:
Genome assembly of a female naked mole rat
Organism name:
Heterocephalus glaber (naked mole-rat)
Isolate:
NMR 29
Sex:
female
BioSample:
SAMN00714537
BioProject:
PRJNA72441
Submitter:
Broad Institute
Date:
2012/02/17
Synonyms:
hetGla2
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000247695.1 (latest)
RefSeq assembly accession:
GCF_000247695.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AHKG01
Assembly method:
AllPaths v. R39605
Genome coverage:
90x
Sequencing technology:
Illumina HiSeq

IDs: 362148 [UID] 362148 [GenBank] 700748 [RefSeq]

See Genome Information for Heterocephalus glaber

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Vera Gorubnova, University of Rochester, NY.

Global statistics

Total sequence length2,618,204,639
Total ungapped length2,314,771,103
Gaps between scaffolds0
Number of scaffolds4,229
Scaffold N5020,532,749
Scaffold L5042
Number of contigs114,653
Contig N5047,778
Contig L5013,150
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)114,653

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,618,188,2534,2282,314,754,71720,532,749110,4240
MoleculeTotal
Length
Mitochondrion MT16,386