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Source database (GenBank or RefSeq) File type

Setaria_italica_v2.0

Organism name:

Setaria italica (foxtail millet)

Infraspecific name:

Strain: Yugu1

BioSample:

SAMN02981383

BioProject:

PRJNA32913

Submitter:

JGI-PGF

Date:

2015/10/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000263155.2 (latest)

RefSeq assembly accession:

GCF_000263155.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

AGNK02

Assembly method:

ARACHNE v. 2007101641HA

Genome coverage:

6.96x

Sequencing technology:

ABI 3739

IDs: 571721 [UID] 2559228 [GenBank] 2690658 [RefSeq]

See Genome Information for Setaria italica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000263155.2	≠	GCF_000263155.2	Setaria_italica_v2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000263155.1	=	GCF_000263155.1	Setaria V1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Annotation was updated on July 2018.

Global statistics

Total sequence length	405,868,399
Total ungapped length	401,044,420
Gaps between scaffolds	0
Number of scaffolds	337
Scaffold N50	47,252,588
Scaffold L50	4
Number of contigs	6,779
Contig N50	126,273
Contig L50	983
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	6,779

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome I	CM003528.1	=	NC_028450.1	0
Chromosome II	CM003529.1	=	NC_028451.1	0
Chromosome III	CM003530.1	=	NC_028452.1	0
Chromosome IV	CM003531.1	=	NC_028453.1	0
Chromosome V	CM003532.1	=	NC_028454.1	0
Chromosome VI	CM003533.1	=	NC_028455.1	0
Chromosome VII	CM003534.1	=	NC_028456.1	0
Chromosome VIII	CM003535.1	=	NC_028457.1	0
Chromosome IX	CM003536.1	=	NC_028458.1	0
unplaced	n/a	n/a	n/a	327

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	405,732,883	336	400,908,904	47,252,588	6,442
Chromosome I	42,145,699	1	41,751,724	42,145,699	621
Chromosome II	49,199,997	1	48,678,284	49,199,997	762
Chromosome III	50,651,951	1	50,091,477	50,651,951	771
Chromosome IV	40,407,879	1	39,925,036	40,407,879	565
Chromosome V	47,252,588	1	46,709,184	47,252,588	748
Chromosome VI	36,014,550	1	35,471,625	36,014,550	561
Chromosome VII	35,964,315	1	35,596,267	35,964,315	561
Chromosome VIII	40,689,132	1	40,112,021	40,689,132	681
Chromosome IX	58,970,307	1	58,347,606	58,970,307	888
unplaced	4,436,465	327	4,225,680	29,974	284

Assembly

Genome Assembly

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Setaria_italica_v2.0

See Genome Information for Setaria italica

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear