U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



HsputHK2154v1.0

Organism name:
Haemophilus sputorum HK 2154 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HK 2154
BioSample:
SAMN00829138
BioProject:
PRJNA89619
Submitter:
JCVI
Date:
2012/08/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000287615.1 (latest)
RefSeq assembly accession:
GCF_000287615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALJP01
Assembly method:
Celera Assembler v. 6.1
Genome coverage:
29x
Sequencing technology:
Illumina

IDs: 419908 [UID] 411808 [GenBank] 419908 [RefSeq]

See Genome Information for Haemophilus sputorum

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,080,113
Total ungapped length2,080,113
Number of contigs25
Contig N50139,985
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,080,113252,080,113139,98500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus sputorum HK 2154Haemophilus sputorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000238795.2Haemophilus sputorum CCUG 13788type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000238795.2Haemophilus sputorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0797.6194.73
Best-match type99.0797.6194.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna