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Aero_vero_AMC35_V1

Organism name:
Aeromonas veronii AMC35 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AMC35
BioSample:
SAMN02463951
BioProject:
PRJNA71519
Submitter:
Broad Institute
Date:
2012/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000298035.1 (latest)
RefSeq assembly accession:
GCF_000298035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGWW01
Assembly method:
allpaths v. R41370
Genome coverage:
285x
Sequencing technology:
Illumina

IDs: 439058 [UID] 430138 [GenBank] 439058 [RefSeq]

See Genome Information for Aeromonas veronii

There are 415 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Graf, J. and Tomasi, A. (Department of Molecular and Cell Biology, University of Connecticut, 91 N. ... Eagleville Road, U-3125, Storrs, CT 06269).
Bacteria provided by Graf, J. and Horneman, A. (Department of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, U-3125, Storrs, CT 06269). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length4,565,607
Total ungapped length4,540,907
Gaps between scaffolds0
Number of scaffolds2
Scaffold N504,172,420
Scaffold L501
Number of contigs20
Contig N50351,392
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,565,60724,540,9074,172,420180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aeromonas veronii AMC35Aeromonas veronii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000820225.1Aeromonas veronii bv. veroniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000820225.1Aeromonas veroniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9493.0693.72
Best-match type96.9493.0693.72

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna