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EleEdw1.0

Organism name:
Elephantulus edwardii (Cape elephant shrew)
Isolate:
Elephantulus edwardi_28Jun2011
Sex:
female
BioSample:
SAMN00749966
BioProject:
PRJNA74589
Submitter:
Broad Institute
Date:
2012/10/10
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000299155.1 (latest)
RefSeq assembly accession:
GCF_000299155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMGZ01
Assembly method:
allpaths v. R42301 HAPLOIDIFY=True
Genome coverage:
62x
Sequencing technology:
Illumina Hi-Seq

IDs: 442068 [UID] 442068 [GenBank] 941488 [RefSeq]

See Genome Information for Elephantulus edwardii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Terence J Robinson, Evolutionary Genomics Group, Department of Biology & Zoology, University of Stellenbosch, South Africa.

Global statistics

Total sequence length3,843,982,861
Total ungapped length3,315,871,847
Gaps between scaffolds0
Number of scaffolds8,768
Scaffold N5015,011,382
Scaffold L5083
Number of contigs288,162
Contig N5024,219
Contig L5038,558
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)288,162

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,843,982,8618,7683,315,871,84715,011,382279,3940