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ASM30257v1

Organism name:
Acinetobacter baumannii TYTH-1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TYTH-1
BioSample:
SAMN02603667
BioProject:
PRJNA74551
Submitter:
National Tsing Hua University
Date:
2012/10/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000302575.1 (latest)
RefSeq assembly accession:
GCF_000302575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 438588 [UID] 438448 [GenBank] 438588 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 25626 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Acinetobacter baumannii TYTH-1 now is deposited in the Bioresource Collection and Research Center, Food Industry Research and Development Institute (Taiwan)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/23/2023 04:02:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,793
CDSs (total)::3,702
Genes (coding)::3,609
CDSs (with protein)::3,609
Genes (RNA)::91
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::75
ncRNAs::4
Pseudo Genes (total)::93
CDSs (without protein)::93
Pseudo Genes (ambiguous residues)::0 of 93
Pseudo Genes (frameshifted)::29 of 93
Pseudo Genes (incomplete)::56 of 93
Pseudo Genes (internal stop)::20 of 93
Pseudo Genes (multiple problems)::11 of 93
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,957,368
Total ungapped length3,957,368
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000302585.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003856.1=NC_018706.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,957,368

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumannii TYTH-1Acinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016746035.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016746035.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7592.9594.43
Best-match type99.7592.9594.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna