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gacin36v1.0

Organism name:
Acinetobacter baumannii Canada BC1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Canada BC1
BioSample:
SAMN00761234
BioProject:
PRJNA53447
Submitter:
Walter Reed Army Institute of Research
Date:
2012/10/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000309275.1 (latest)
RefSeq assembly accession:
GCF_000309275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMSZ01
Assembly method:
Celera Assembler v. 6.1
Genome coverage:
62x
Sequencing technology:
Illumina

IDs: 494408 [UID] 451758 [GenBank] 494408 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 26487 assemblies for this organism

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History (Show revision history)

Comment

This strain is part of the 'Genomic Sequencing of a Diversity of US Military Acinetobacter baumannii-calcoaceticus Complex Isolates' project as part of the Genome Sequencing Centers for Infectious Diseases contract. (http://gsc.jcvi.org/projects/gsc/a_baumannii/index.php)

This project has been funded in whole or in ... part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services through the Genomic Sequencing Centers for Infectious Diseases under contract number HHSN272200900007C.

Source DNA and bacteria available from Walter Reed Army Institute of Research, MDRO repository (http://wrair-www.army.mil/OtherServices_MRSN.aspx), and through the BEI Repository (http://www.beiresources.org).  more

Global statistics

Total sequence length3,936,404
Total ungapped length3,936,404
Number of contigs66
Contig N50190,509
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,936,404663,936,404190,50900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumannii Canada BC1Acinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016746035.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016746035.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8587.4888.41
Best-match type97.8587.4888.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna