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Source database (GenBank or RefSeq) File type

CAAS_Brap_v3.01

Organism name:

Brassica rapa (field mustard)

Infraspecific name:

Cultivar: Chiifu-401-42

BioSample:

SAMN02981293

BioProject:

PRJNA59981

Submitter:

Brassica rapa genome sequencing project, BraGSP

Date:

2020/01/23

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000309985.3 (latest)

RefSeq assembly accession:

GCF_000309985.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

AENI03

Assembly method:

Canu v. 1.5

Expected final version:

Genome coverage:

57x

Sequencing technology:

PacBio RSII

IDs: 5490271 [UID] 15887218 [GenBank] 17076628 [RefSeq]

See Genome Information for Brassica rapa

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000309985.3	≠	GCF_000309985.2	CAAS_Brap_v3.01	Chromosome	Latest GenBank, Latest RefSeq
GCA_000309985.2	n/a	n/a	ASM30998v2	Scaffold	Replaced GenBank
GCA_000309985.1	≠	GCF_000309985.1	Brapa_1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	352,983,092
Total ungapped length	350,843,740
Gaps between scaffolds	0
Number of scaffolds	1,100
Scaffold N50	28,928,902
Scaffold L50	6
Number of contigs	1,508
Contig N50	1,386,548
Contig L50	71
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	1,100

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A10	CM020897.1	=	NC_024804.2	0
Chromosome A01	CM020888.1	=	NC_024795.2	0
Chromosome A02	CM020889.1	=	NC_024796.2	0
Chromosome A03	CM020890.1	=	NC_024797.2	0
Chromosome A04	CM020891.1	=	NC_024798.2	0
Chromosome A05	CM020892.1	=	NC_024799.2	0
Chromosome A06	CM020893.1	=	NC_024800.2	0
Chromosome A07	CM020894.1	=	NC_024801.2	0
Chromosome A08	CM020895.1	=	NC_024802.2	0
Chromosome A09	CM020896.1	=	NC_024803.2	0
unplaced	n/a	n/a	n/a	1,089

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	352,829,610	1,099	350,690,258	28,928,902	408
Chromosome A10	20,725,698	1	20,685,057	20,725,698	30
Chromosome A01	29,595,527	1	29,328,293	29,595,527	57
Chromosome A02	31,442,979	1	31,258,554	31,442,979	32
Chromosome A03	38,154,160	1	37,471,166	38,154,160	38
Chromosome A04	21,928,416	1	21,804,605	21,928,416	28
Chromosome A05	28,493,056	1	28,385,949	28,493,056	62
Chromosome A06	29,167,992	1	28,966,724	29,167,992	38
Chromosome A07	28,928,902	1	28,856,432	28,928,902	27
Chromosome A08	22,981,702	1	22,880,020	22,981,702	28
Chromosome A09	45,156,810	1	44,799,090	45,156,810	68
unplaced	56,254,368	1,089	56,254,368	60,485	0

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CAAS_Brap_v3.01

See Genome Information for Brassica rapa

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear