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ASM31398v2

Organism name:
Echinops telfairi (small Madagascar hedgehog)
Isolate:
266
Sex:
female
BioSample:
SAMN00216137
BioProject:
PRJNA12590
Submitter:
Broad Institute
Date:
2019/07/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000313985.2 (latest)
RefSeq assembly accession:
GCF_000313985.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AAIY03
Assembly method:
ALLPATHS v. R37599; Dovetail HiC v. 22-Jul-2017
Expected final version:
yes
Genome coverage:
78x
Sequencing technology:
Illumina HiSeq

IDs: 3840521 [UID] 12113638 [GenBank] 13650898 [RefSeq]

See Genome Information for Echinops telfairi

History (Show revision history)

Comment

Global statistics

Total sequence length2,947,119,619
Total ungapped length2,605,196,151
Gaps between scaffolds0
Number of scaffolds7,490
Scaffold N5054,422,506
Scaffold L5017
Number of contigs277,896
Contig N5020,425
Contig L5035,407
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)7,490

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,947,103,0707,4892,605,179,60254,422,506270,4060
MoleculeTotal
Length
Mitochondrion MT16,549