U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Graimondii2_0

  • Anomalous assembly.
Organism name:
Gossypium raimondii (Peruvian cotton)
BioSample:
SAMN02743920
BioProject:
PRJNA171262
Submitter:
DOE Joint Genome Institute
Date:
2012/12/20
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000327365.1 (replaced)
RefSeq assembly accession:
GCF_000327365.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for GenBank version
WGS Project:
ALYE01
Assembly method:
ARACHNE v. 20071016_modified
Genome coverage:
19.7x
Sequencing technology:
ABI3730

IDs: 519268 [UID] 519268 [GenBank] 1741468 [RefSeq]

See Genome Information for Gossypium raimondii

Pathogen Detection Resources

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added to the scaffolds in March 2015
In May 2022 71 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length761,405,269
Total ungapped length747,964,930
Gaps between scaffolds0
Number of scaffolds1,033
Scaffold N5062,175,169
Scaffold L506
Number of contigs20,750
Contig N50119,799
Contig L501,813
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)20,750

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000327375.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001740.1=NC_026929.10
Chromosome 2CM001741.1=NC_026930.10
Chromosome 3CM001742.1=NC_026931.10
Chromosome 4CM001743.1=NC_026932.10
Chromosome 5CM001744.1=NC_026933.10
Chromosome 6CM001745.1=NC_026934.10
Chromosome 7CM001746.1=NC_026935.10
Chromosome 8CM001747.1=NC_026936.10
Chromosome 9CM001748.1=NC_026937.10
Chromosome 10CM001749.1=NC_026938.10
Chromosome 11CM001750.1=NC_026939.10
Chromosome 12CM001751.1=NC_026940.10
Chromosome 13CM001752.1=NC_026941.10
unplacedn/an/an/a1,020

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All761,405,2691,033747,964,93062,175,16919,7170
Chromosome 155,868,233154,872,05355,868,2331,4030
Chromosome 262,769,430161,691,17562,769,4301,4930
Chromosome 345,765,648145,103,17045,765,6481,0710
Chromosome 462,178,258161,256,30362,178,2581,4390
Chromosome 564,140,413163,307,57164,140,4131,3920
Chromosome 651,074,515150,094,11251,074,5151,3310
Chromosome 760,982,465160,104,65260,982,4651,4480
Chromosome 857,128,820156,441,86457,128,8201,3260
Chromosome 970,713,020169,558,92470,713,0201,8250
Chromosome 1062,175,169161,182,54362,175,1691,4500
Chromosome 1162,681,010161,617,00662,681,0101,5200
Chromosome 1235,429,946134,914,68935,429,9468600
Chromosome 1358,321,163157,564,52658,321,1631,3650
unplaced12,177,1791,02010,256,34216,5841,7940