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TupChi_1.0

Organism name:
Tupaia chinensis (Chinese tree shrew)
Sex:
male
BioSample:
SAMN01084043
BioProject:
PRJNA169406
Submitter:
BGI
Date:
2013/01/31
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000334495.1 (latest)
RefSeq assembly accession:
GCF_000334495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALAR01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
80x
Sequencing technology:
Illumina HiSeq 2000

IDs: 531728 [UID] 531728 [GenBank] 858458 [RefSeq]

See Genome Information for Tupaia chinensis

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,846,580,235
Total ungapped length2,706,389,135
Gaps between scaffolds0
Number of scaffolds50,750
Scaffold N503,670,124
Scaffold L50232
Number of contigs242,445
Contig N5025,938
Contig L5030,450
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)242,445

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,846,580,23550,7502,706,389,1353,670,124191,6950