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Cliv_1.0

Organism name:
Columba livia (rock pigeon)
Infraspecific name:
Breed: Danish Tumbler
Sex:
male
BioSample:
SAMN02981415
BioProject:
PRJNA167554
Submitter:
BGI
Date:
2013/02/11
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000337935.1 (replaced)
RefSeq assembly accession:
GCF_000337935.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AKCR01
Assembly method:
SOAPdenovo v. 2.0
Genome coverage:
60x
Sequencing technology:
Illumina HiSeq 2000

IDs: 539798 [UID] 539798 [GenBank] 772978 [RefSeq]

See Genome Information for Columba livia

There are 7 assemblies for this organism

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History (Show revision history)

Comment

For Illumina DNA sequencing (HiSeq 2000), seven paired-end sequencing libraries were constructed with insert sizes of about 170bp, 500 bp, 800bp, 2 kb, 5 kb, 10 kb and 20kb, and the raw data was about 127.17G (98X).After correcting the ... short insert size data and removing the small peak of the large insert size data, we got about 81.56G (62.74X) high quality data. Then we begin to assemble with SOAPdenovo (version2.0). The Columba livia assembly version 1.0 has a sequencing depth of 60X and more than 87% of the assembly has 20-fold raw sequence coverage.  more

Global statistics

Total sequence length1,107,989,085
Total ungapped length1,086,925,875
Gaps between scaffolds0
Number of scaffolds14,923
Scaffold N503,148,738
Scaffold L5082
Number of contigs100,099
Contig N5026,579
Contig L5012,141
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)100,099

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,107,971,85614,9221,086,908,6463,148,73885,1760
MoleculeTotal
Length
Mitochondrion MT17,229