U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Acin_baum_NIPH_329_V1

Organism name:
Acinetobacter baumannii NIPH 329 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NIPH 329
BioSample:
SAMN01828148
BioProject:
PRJNA183257
Submitter:
Broad Institute
Date:
2013/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000369225.1 (latest)
RefSeq assembly accession:
GCF_000369225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APQY01
Assembly method:
allpaths v. R43553
Genome coverage:
86.0x
Sequencing technology:
Illumina

IDs: 670018 [UID] 596478 [GenBank] 670018 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 26514 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,005,748
Total ungapped length3,994,296
Gaps between scaffolds0
Number of scaffolds8
Scaffold N502,662,207
Scaffold L501
Number of contigs14
Contig N50439,299
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,005,74883,994,2962,662,20760

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumannii NIPH 329Acinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009035845.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009035845.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7588.0087.89
Best-match type97.7588.0087.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna