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Acin_sp_CIP_70_18_V1

Organism name:
Acinetobacter higginsii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CIP 70.18
BioSample:
SAMN01087864
BioProject:
PRJNA183240
Submitter:
Broad Institute
Date:
2013/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000369525.1 (latest)
RefSeq assembly accession:
GCF_000369525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APRN01
Assembly method:
allpaths v. R43241
Genome coverage:
205.0x
Sequencing technology:
Illumina

IDs: 670318 [UID] 596628 [GenBank] 670318 [RefSeq]

See Genome Information for Acinetobacter higginsii

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,663,178
Total ungapped length4,596,798
Gaps between scaffolds0
Number of scaffolds28
Scaffold N502,623,269
Scaffold L501
Number of contigs50
Contig N50398,661
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,663,178284,596,7982,623,269220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter higginsiiAcinetobacter higginsii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000369485.1Acinetobacter dispersustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.7770.6879.26

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected