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Source database (GenBank or RefSeq) File type

ASM38505v1

Organism name:

gamma proteobacterium SCGC AAA168-P09 (g-proteobacteria)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: SCGC AAA168-P09

BioSample:

SAMN02441643

BioProject:

PRJNA195691

Submitter:

DOE Joint Genome Institute

Date:

2013/04/26

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from single cell
genus undefined

GenBank assembly accession:

GCA_000385055.1 (latest)

RefSeq assembly accession:

GCF_000385055.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

ARRL01

Assembly method:

Unknown program v. before 2011-11-10

Single-cell amplification:

Yes

Genome coverage:

Unknown

Sequencing technology:

Unknown

IDs: 666578 [UID] 609378 [GenBank] 666578 [RefSeq]

See Genome Information for gamma proteobacterium SCGC AAA168-P09

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000385055.1	=	GCF_000385055.1	ASM38505v1	Contig	Latest GenBank, RefSeq suppressed

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404433
Source DNA and Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Source DNA available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Contacts: Ramunas Stepanauskas (rstepanauskas@bigelow.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##investigation_type::bacteria_archaea
project_name::gamma proteobacterium SCGC AAA168-P09
collection_date::9/16/2009 12:00:00 AM
lat_lon::43.84 -69.64
depth::Missing
alt_elev::Missing
country::Atlantic Ocean
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::null
finishing_strategy::Missing
environment::Marine
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi0020127
Funding Program::DOE-CSP 2011
Isolation Site::Gulf of Maine
##MIGS-Data-END##

Global statistics

Total sequence length	1,309,253
Total ungapped length	1,309,253
Number of contigs	46
Contig N50	279,251
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	46

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.03	0.30	0.11

Assembly

Genome Assembly

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Download Assembly

ASM38505v1

See Genome Information for gamma proteobacterium SCGC AAA168-P09

Pathogen Detection Resources

History (Show revision history)

Comment

MIGS-Data

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Taxonomy Check Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result