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RIIF

Organism name:
Pasteurella multocida RIIF (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RIIF
BioSample:
SAMN02470562
BioProject:
PRJNA191139
Submitter:
Moredun Research Institute
Date:
2013/06/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000412105.1 (latest)
RefSeq assembly accession:
GCF_000412105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARNZ01
Assembly method:
Velvet v. 2009
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
Illumina

IDs: 712908 [UID] 706928 [GenBank] 712908 [RefSeq]

See Genome Information for Pasteurella multocida

There are 1554 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria and source DNA ... available from Alex Lainson, Moredun Research Institute, Edinburgh, EH26 0PZ, Scotland, UK  more

Global statistics

Total sequence length2,195,634
Total ungapped length2,195,634
Number of contigs243
Contig N5017,182
Contig L5043
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)243

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,195,6342432,195,63417,18200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella multocida RIIFPasteurella multocida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636625.1Pasteurella multocida subsp. gallicidatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636625.1Pasteurella multocidatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9495.1189.81
Best-match type98.9495.1189.81

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna