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ASM41952v1

Organism name:
Leucothrix mucor DSM 2157 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2157
BioSample:
SAMN02440559
BioProject:
PRJNA81139
Submitter:
JGI
Date:
2013/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000419525.1 (latest)
RefSeq assembly accession:
GCF_000419525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATTE01
Assembly method:
Velvet v. 1.1.05; ALLPATHS v. 39750; Phrap v. 4.24
Genome coverage:
Unknown
Sequencing technology:
Unknown

IDs: 39541 [UID] 727868 [GenBank] 846448 [RefSeq]

See Genome Information for Leucothrix mucor

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404295
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan Eisen (jaeisen@ucdavis.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::Velvet v. 1.1.05; ALLPATHS v. 39750; Phrap v. 4.24
country::USA
investigation_type::bacteria_archaea
project_name::Leucothrix mucor DSM 2157
sequencing_meth::WGS
ref_biomaterial::DSM 2157
finishing_strategy::Level 2: High-Quality Draft
GOLD Stamp ID::Gi13749
Current Finishing Status::Level 3: Improved-High-Quality Draft
Type Strain::Yes
Funding Program::DOE-CSP 2011
Isolation Site::seaweed, Friday Harbor, WA
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length5,185,674
Total ungapped length5,185,674
Number of contigs2
Contig N505,096,637
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,185,67425,185,6745,096,63700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leucothrix mucor DSM 2157Leucothrix mucor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009728735.1Pantoea phytobeneficialistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.970.000.00

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected